Assembly
ASM5226590v1
BioProject PRJNA1294857 · BioSample SAMN50128640
GENOME-RESOLVED EVIDENCE
GCA_052265905.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3475414 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXBL_06860 | XZL50285.1 | OG0000061 | CP198215.1:1563833–1565185 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXBL_00690 | XZL49103.1 | OG0000131 | CP198215.1:155082–156035 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXBL_06850 | XZL50283.1 | OG0000212 | CP198215.1:1562908–1563399 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXBL_13585 | XZL48632.1 | OG0000229 | CP198215.1:3002619–3003467 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXBL_12910 | XZL48528.1 | OG0000234 | CP198215.1:2873892–2875070 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXBL_06855 | XZL50284.1 | OG0000785 | CP198215.1:1563402–1563821 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXBL_14880 | XZL48863.1 | OG0001124 | CP198215.1:3259890–3262487 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXBL_01830 | XZL49314.1 | OG0001228 | CP198215.1:411646–413169 + | L-lactate permease [Clostridium perfringens] |
| crtACSXBL_13605 | XZL48636.1 | OG0001394 | CP198215.1:3006593–3007375 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXBL_00635 | XZL49092.1 | OG0001639 | CP198215.1:141318–142094 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.