Assembly
ASM5226658v1
BioProject PRJNA1294857 · BioSample SAMN50128643
GENOME-RESOLVED EVIDENCE
GCA_052266585.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3475414 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXBO_06850 | XZL59424.1 | OG0000061 | CP198513.1:1564006–1565358 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXBO_00690 | XZL58239.1 | OG0000131 | CP198513.1:155255–156208 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXBO_06840 | XZL59422.1 | OG0000212 | CP198513.1:1563081–1563572 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXBO_13570 | XZL57764.1 | OG0000229 | CP198513.1:3002792–3003640 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXBO_12895 | XZL57657.1 | OG0000234 | CP198513.1:2874065–2875243 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXBO_06845 | XZL59423.1 | OG0000785 | CP198513.1:1563575–1563994 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXBO_14865 | XZL57996.1 | OG0001124 | CP198513.1:3260063–3262660 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXBO_01825 | XZL58449.1 | OG0001228 | CP198513.1:411819–413342 + | L-lactate permease [Clostridium perfringens] |
| crtACSXBO_13590 | XZL57768.1 | OG0001394 | CP198513.1:3006766–3007548 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXBO_00635 | XZL58228.1 | OG0001639 | CP198513.1:141491–142267 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.