Assembly
ASM5226719v1
BioProject PRJNA1294857 · BioSample SAMN50128636
GENOME-RESOLVED EVIDENCE
GCA_052267195.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3584336 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXBH_06110 | XZL65600.1 | OG0000061 | CP198231.1:1392159–1393511 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXBH_00150 | XZL64468.1 | OG0000131 | CP198231.1:35585–36538 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXBH_06100 | XZL65598.1 | OG0000212 | CP198231.1:1391234–1391725 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXBH_12420 | XZL63964.1 | OG0000229 | CP198231.1:2770052–2770900 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXBH_11700 | XZL63848.1 | OG0000234 | CP198231.1:2634697–2635875 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXBH_06105 | XZL65599.1 | OG0000785 | CP198231.1:1391728–1392147 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXBH_13740 | XZL64199.1 | OG0001124 | CP198231.1:3030629–3033226 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXBH_01205 | XZL64660.1 | OG0001228 | CP198231.1:278868–280391 + | L-lactate permease [Clostridium perfringens] |
| crtACSXBH_12440 | XZL63968.1 | OG0001394 | CP198231.1:2774027–2774809 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXBH_00105 | XZL64459.1 | OG0001639 | CP198231.1:24944–25720 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.