Assembly
ASM5226721v1
BioProject PRJNA1294857 · BioSample SAMN50128638
GENOME-RESOLVED EVIDENCE
GCA_052267215.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3495784 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXBJ_05650 | XZL71806.1 | OG0000061 | CP198226.1:1230948–1232300 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXBJ_11645 | XZL70076.1 | OG0000131 | CP198226.1:2630882–2631835 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXBJ_05660 | XZL71808.1 | OG0000212 | CP198226.1:1232734–1233225 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXBJ_14440 | XZL70559.1 | OG0000229 | CP198226.1:3203719–3204567 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXBJ_15055 | XZL70654.1 | OG0000234 | CP198226.1:3322727–3323905 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXBJ_05655 | XZL71807.1 | OG0000785 | CP198226.1:1232312–1232731 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXBJ_13050 | XZL70312.1 | OG0001124 | CP198226.1:2923798–2926395 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXBJ_10545 | XZL69871.1 | OG0001228 | CP198226.1:2373173–2374696 - | L-lactate permease [Clostridium perfringens] |
| crtACSXBJ_14420 | XZL70555.1 | OG0001394 | CP198226.1:3199810–3200592 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXBJ_11705 | XZL70088.1 | OG0001639 | CP198226.1:2646488–2647264 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.