Assembly
ASM5226723v1
BioProject PRJNA1294857 · BioSample SAMN50128621
GENOME-RESOLVED EVIDENCE
GCA_052267235.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3348342 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXA2_08220 | XZL75312.1 | OG0000061 | CP198313.1:1743403–1744755 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXA2_14090 | XZL76442.1 | OG0000131 | CP198313.1:3129078–3130031 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXA2_08230 | XZL75314.1 | OG0000212 | CP198313.1:1745189–1745680 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXA2_02010 | XZL76906.1 | OG0000229 | CP198313.1:391768–392616 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXA2_02620 | XZL76999.1 | OG0000234 | CP198313.1:509341–510519 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXA2_08225 | XZL75313.1 | OG0000785 | CP198313.1:1744767–1745186 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXA2_00710 | XZL76677.1 | OG0001124 | CP198313.1:132937–135534 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXA2_13010 | XZL76239.1 | OG0001228 | CP198313.1:2872235–2873758 - | L-lactate permease [Clostridium perfringens] |
| crtACSXA2_01990 | XZL76902.1 | OG0001394 | CP198313.1:387859–388641 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXA2_14130 | XZL76450.1 | OG0001639 | CP198313.1:3139912–3140688 - | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.