Assembly
ASM5226724v1
BioProject PRJNA1294857 · BioSample SAMN50128622
GENOME-RESOLVED EVIDENCE
GCA_052267245.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3348312 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXA3_08220 | XZL78192.1 | OG0000061 | CP198310.1:1743420–1744772 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXA3_14075 | XZL79325.1 | OG0000131 | CP198310.1:3129095–3130048 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXA3_08230 | XZL78194.1 | OG0000212 | CP198310.1:1745206–1745697 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXA3_02010 | XZL79791.1 | OG0000229 | CP198310.1:391785–392633 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXA3_02620 | XZL79886.1 | OG0000234 | CP198310.1:509358–510536 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXA3_08225 | XZL78193.1 | OG0000785 | CP198310.1:1744784–1745203 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXA3_00710 | XZL79561.1 | OG0001124 | CP198310.1:132955–135552 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXA3_13000 | XZL79123.1 | OG0001228 | CP198310.1:2872252–2873775 - | L-lactate permease [Clostridium perfringens] |
| crtACSXA3_01990 | XZL79787.1 | OG0001394 | CP198310.1:387876–388658 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXA3_14115 | XZL79333.1 | OG0001639 | CP198310.1:3139929–3140705 - | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.