Assembly
ASM5226728v1
BioProject PRJNA1294857 · BioSample SAMN50128607
GENOME-RESOLVED EVIDENCE
GCA_052267285.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3445530 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXAO_07395 | XZL92721.1 | OG0000061 | CP198155.1:1600509–1601861 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXAO_13540 | XZL91123.1 | OG0000131 | CP198155.1:2990123–2991076 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXAO_07405 | XZL92723.1 | OG0000212 | CP198155.1:1602295–1602786 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXAO_01330 | XZL91580.1 | OG0000229 | CP198155.1:263562–264410 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXAO_01935 | XZL91672.1 | OG0000234 | CP198155.1:379808–380986 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXAO_07400 | XZL92722.1 | OG0000785 | CP198155.1:1601873–1602292 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXAO_00030 | XZL91351.1 | OG0001124 | CP198155.1:3858–6455 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXAO_12445 | XZL90918.1 | OG0001228 | CP198155.1:2736180–2737703 - | L-lactate permease [Clostridium perfringens] |
| crtACSXAO_01310 | XZL91576.1 | OG0001394 | CP198155.1:259653–260435 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXAO_13580 | XZL91131.1 | OG0001639 | CP198155.1:3000918–3001694 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.