Assembly
ASM5226729v1
BioProject PRJNA1294857 · BioSample SAMN50128612
GENOME-RESOLVED EVIDENCE
GCA_052267295.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3438644 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXAT_06540 | XZL95670.1 | OG0000061 | CP198132.1:1514909–1516261 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXAT_00700 | XZL94549.1 | OG0000131 | CP198132.1:158257–159210 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXAT_06530 | XZL95668.1 | OG0000212 | CP198132.1:1513984–1514475 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXAT_12675 | XZL94033.1 | OG0000229 | CP198132.1:2842985–2843833 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXAT_12010 | XZL93929.1 | OG0000234 | CP198132.1:2717446–2718624 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXAT_06535 | XZL95669.1 | OG0000785 | CP198132.1:1514478–1514897 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXAT_13985 | XZL94264.1 | OG0001124 | CP198132.1:3102170–3104767 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXAT_01795 | XZL94752.1 | OG0001228 | CP198132.1:411820–413343 + | L-lactate permease [Clostridium perfringens] |
| crtACSXAT_12695 | XZL94037.1 | OG0001394 | CP198132.1:2846960–2847742 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXAT_00660 | XZL94541.1 | OG0001639 | CP198132.1:147601–148377 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.