Assembly
ASM5226730v1
BioProject PRJNA1294857 · BioSample SAMN50128609
GENOME-RESOLVED EVIDENCE
GCA_052267305.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3438827 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXAQ_06790 | XZL98789.1 | OG0000061 | CP198149.1:1553996–1555348 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXAQ_00695 | XZL97611.1 | OG0000131 | CP198149.1:156394–157347 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXAQ_06780 | XZL98787.1 | OG0000212 | CP198149.1:1553071–1553562 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXAQ_13035 | XZL97115.1 | OG0000229 | CP198149.1:2913399–2914247 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXAQ_12310 | XZL96996.1 | OG0000234 | CP198149.1:2777667–2778845 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXAQ_06785 | XZL98788.1 | OG0000785 | CP198149.1:1553565–1553984 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXAQ_14335 | XZL97346.1 | OG0001124 | CP198149.1:3170812–3173409 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXAQ_01800 | XZL97816.1 | OG0001228 | CP198149.1:415013–416536 + | L-lactate permease [Clostridium perfringens] |
| crtACSXAQ_13055 | XZL97119.1 | OG0001394 | CP198149.1:2917374–2918156 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXAQ_00655 | XZL97603.1 | OG0001639 | CP198149.1:145739–146515 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.