Assembly
ASM5226737v1
BioProject PRJNA1294857 · BioSample SAMN50128599
GENOME-RESOLVED EVIDENCE
GCA_052267375.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3357987 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXAG_05615 | XZM19629.1 | OG0000061 | CP198206.1:1270176–1271528 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXAG_14795 | XZM18453.1 | OG0000131 | CP198206.1:3218430–3219383 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXAG_05605 | XZM19627.1 | OG0000212 | CP198206.1:1269251–1269742 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXAG_12010 | XZM17973.1 | OG0000229 | CP198206.1:2654210–2655058 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXAG_11355 | XZM17870.1 | OG0000234 | CP198206.1:2528806–2529984 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXAG_05610 | XZM19628.1 | OG0000785 | CP198206.1:1269745–1270164 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXAG_13315 | XZM18203.1 | OG0001124 | CP198206.1:2911057–2913654 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXAG_00515 | XZM18652.1 | OG0001228 | CP198206.1:104767–106290 + | L-lactate permease [Clostridium perfringens] |
| rnfAACSXAG_05565 | XZM19620.1 | OG0001328 | CP198206.1:1262607–1263182 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXAG_12030 | XZM17977.1 | OG0001394 | CP198206.1:2658184–2658966 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXAG_14730 | XZM18440.1 | OG0001639 | CP198206.1:3202652–3203428 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.