Assembly
ASM5226742v1
BioProject PRJNA1294857 · BioSample SAMN50128592
GENOME-RESOLVED EVIDENCE
GCA_052267425.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3364172 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW99_08580 | XZM20164.1 | OG0000061 | CP197996.1:1789950–1791302 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW99_14440 | XZM21300.1 | OG0000131 | CP197996.1:3136261–3137214 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW99_08590 | XZM20166.1 | OG0000212 | CP197996.1:1791736–1792227 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW99_01990 | XZM21788.1 | OG0000229 | CP197996.1:388536–389384 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW99_02830 | XZM21929.1 | OG0000234 | CP197996.1:532591–533769 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW99_08585 | XZM20165.1 | OG0000785 | CP197996.1:1791314–1791733 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW99_00700 | XZM21557.1 | OG0001124 | CP197996.1:129180–131777 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW99_13340 | XZM21095.1 | OG0001228 | CP197996.1:2879947–2881470 - | L-lactate permease [Clostridium perfringens] |
| crtACSW99_01970 | XZM21784.1 | OG0001394 | CP197996.1:384627–385409 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW99_14480 | XZM21308.1 | OG0001639 | CP197996.1:3147092–3147868 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.