Assembly
ASM5226757v1
BioProject PRJNA1294857 · BioSample SAMN50128593
GENOME-RESOLVED EVIDENCE
GCA_052267575.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3238996 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXAA_08095 | XZM23095.1 | OG0000061 | CP197995.1:1719194–1720546 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXAA_13925 | XZM24216.1 | OG0000131 | CP197995.1:3080000–3080953 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXAA_08105 | XZM23097.1 | OG0000212 | CP197995.1:1720980–1721471 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXAA_02050 | XZM24689.1 | OG0000229 | CP197995.1:400836–401684 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXAA_02680 | XZM24786.1 | OG0000234 | CP197995.1:523070–524248 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXAA_08100 | XZM23096.1 | OG0000785 | CP197995.1:1720558–1720977 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXAA_00710 | XZM24452.1 | OG0001124 | CP197995.1:133645–136242 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXAA_12840 | XZM24016.1 | OG0001228 | CP197995.1:2826403–2827926 - | L-lactate permease [Clostridium perfringens] |
| crtACSXAA_02030 | XZM24685.1 | OG0001394 | CP197995.1:396927–397709 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXAA_13965 | XZM24224.1 | OG0001639 | CP197995.1:3090842–3091618 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.