Assembly
ASM5226866v1
BioProject PRJNA1294857 · BioSample SAMN50128617
GENOME-RESOLVED EVIDENCE
GCA_052268665.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4030796 bp · GC 28.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXAY_07505 | XZM34895.1 | OG0000061 | CP198091.1:1642454–1643806 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXAY_00765 | XZM33600.1 | OG0000131 | CP198091.1:169368–170321 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXAY_07495 | XZM34893.1 | OG0000212 | CP198091.1:1641529–1642020 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXAY_14615 | XZM33110.1 | OG0000229 | CP198091.1:3092668–3093516 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXAY_13955 | XZM33006.1 | OG0000234 | CP198091.1:2965608–2966786 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXAY_07500 | XZM34894.1 | OG0000785 | CP198091.1:1642023–1642442 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXAY_15990 | XZM33352.1 | OG0001124 | CP198091.1:3369269–3371866 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXAY_01810 | XZM33795.1 | OG0001228 | CP198091.1:414868–416391 + | L-lactate permease [Clostridium perfringens] |
| crtACSXAY_14635 | XZM33114.1 | OG0001394 | CP198091.1:3096643–3097425 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXAY_00725 | XZM33592.1 | OG0001639 | CP198091.1:158703–159479 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.