Assembly
ASM5226883v1
BioProject PRJNA1294857 · BioSample SAMN50128601
GENOME-RESOLVED EVIDENCE
GCA_052268835.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3458182 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXAI_08445 | XZM35633.1 | OG0000061 | CP198193.1:1759594–1760946 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXAI_14565 | XZM36801.1 | OG0000131 | CP198193.1:3164332–3165285 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXAI_08455 | XZM35635.1 | OG0000212 | CP198193.1:1761380–1761871 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXAI_02010 | XZM37277.1 | OG0000229 | CP198193.1:391835–392683 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXAI_02710 | XZM37390.1 | OG0000234 | CP198193.1:523020–524198 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXAI_08450 | XZM35634.1 | OG0000785 | CP198193.1:1760958–1761377 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXAI_00710 | XZM37048.1 | OG0001124 | CP198193.1:132938–135535 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXAI_13450 | XZM36596.1 | OG0001228 | CP198193.1:2909243–2910766 - | L-lactate permease [Clostridium perfringens] |
| crtACSXAI_01990 | XZM37273.1 | OG0001394 | CP198193.1:387926–388708 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXAI_14605 | XZM36808.1 | OG0001639 | CP198193.1:3175165–3175941 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.