Assembly
ASM5227017v1
BioProject PRJNA1294857 · BioSample SAMN50128597
GENOME-RESOLVED EVIDENCE
GCA_052270175.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3459820 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXAE_07870 | XZM59899.1 | OG0000061 | CP197980.1:1680321–1681673 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXAE_13810 | XZM61036.1 | OG0000131 | CP197980.1:3054041–3054994 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXAE_07880 | XZM59901.1 | OG0000212 | CP197980.1:1682107–1682598 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXAE_01500 | XZM61524.1 | OG0000229 | CP197980.1:299866–300714 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXAE_02240 | XZM61643.1 | OG0000234 | CP197980.1:434487–435665 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXAE_07875 | XZM59900.1 | OG0000785 | CP197980.1:1681685–1682104 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXAE_00195 | XZM61294.1 | OG0001124 | CP197980.1:39579–42176 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXAE_12740 | XZM60840.1 | OG0001228 | CP197980.1:2804713–2806236 - | L-lactate permease [Clostridium perfringens] |
| crtACSXAE_01480 | XZM61520.1 | OG0001394 | CP197980.1:295957–296739 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXAE_13850 | XZM61043.1 | OG0001639 | CP197980.1:3064874–3065650 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.