Assembly
ASM5227019v1
BioProject PRJNA1294857 · BioSample SAMN50128604
GENOME-RESOLVED EVIDENCE
GCA_052270195.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3358118 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXAL_02850 | XZM67804.1 | OG0000061 | CP198179.1:636552–637904 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXAL_11765 | XZM66666.1 | OG0000131 | CP198179.1:2546929–2547882 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXAL_02840 | XZM67802.1 | OG0000212 | CP198179.1:635627–636118 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXAL_08995 | XZM66190.1 | OG0000229 | CP198179.1:1986233–1987081 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXAL_08380 | XZM66095.1 | OG0000234 | CP198179.1:1867846–1869024 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXAL_02845 | XZM67803.1 | OG0000785 | CP198179.1:636121–636540 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXAL_10295 | XZM66419.1 | OG0001124 | CP198179.1:2243624–2246221 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXAL_12880 | XZM66875.1 | OG0001228 | CP198179.1:2809928–2811451 + | L-lactate permease [Clostridium perfringens] |
| crtACSXAL_09015 | XZM66194.1 | OG0001394 | CP198179.1:1990208–1990990 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXAL_11725 | XZM66658.1 | OG0001639 | CP198179.1:2536277–2537053 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.