Assembly
ASM5227021v1
BioProject PRJNA1294857 · BioSample SAMN50128596
GENOME-RESOLVED EVIDENCE
GCA_052270215.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3238996 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXAD_13155 | XZM72897.1 | OG0000061 | CP197985.1:2887197–2888549 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXAD_07330 | XZM74504.1 | OG0000131 | CP197985.1:1526790–1527743 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXAD_13145 | XZM72895.1 | OG0000212 | CP197985.1:2886272–2886763 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXAD_04585 | XZM74032.1 | OG0000229 | CP197985.1:967063–967911 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXAD_03955 | XZM73935.1 | OG0000234 | CP197985.1:844499–845677 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXAD_13150 | XZM72896.1 | OG0000785 | CP197985.1:2886766–2887185 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXAD_05925 | XZM74268.1 | OG0001124 | CP197985.1:1232505–1235102 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXAD_08415 | XZM71983.1 | OG0001228 | CP197985.1:1779817–1781340 + | L-lactate permease [Clostridium perfringens] |
| crtACSXAD_04605 | XZM74036.1 | OG0001394 | CP197985.1:971038–971820 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXAD_07290 | XZM74496.1 | OG0001639 | CP197985.1:1516125–1516901 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.