Assembly
ASM5227023v1
BioProject PRJNA1294857 · BioSample SAMN50128594
GENOME-RESOLVED EVIDENCE
GCA_052270235.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3635707 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXAB_14770 | XZM78868.1 | OG0000061 | CP197990.1:3177186–3178538 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXAB_05165 | XZM80077.1 | OG0000131 | CP197990.1:1172278–1173231 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXAB_14780 | XZM78870.1 | OG0000212 | CP197990.1:3178972–3179463 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXAB_08240 | XZM77634.1 | OG0000229 | CP197990.1:1773962–1774810 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXAB_08970 | XZM77751.1 | OG0000234 | CP197990.1:1909301–1910479 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXAB_14775 | XZM78869.1 | OG0000785 | CP197990.1:3178550–3178969 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXAB_06650 | XZM80328.1 | OG0001124 | CP197990.1:1479435–1482032 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXAB_04065 | XZM79871.1 | OG0001228 | CP197990.1:912106–913629 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSXAB_14820 | XZM78878.1 | OG0001328 | CP197990.1:3185529–3186104 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXAB_08220 | XZM77630.1 | OG0001394 | CP197990.1:1770053–1770835 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXAB_05205 | XZM80084.1 | OG0001639 | CP197990.1:1183110–1183886 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.