Assembly
ASM5227024v1
BioProject PRJNA1294857 · BioSample SAMN50128579
GENOME-RESOLVED EVIDENCE
GCA_052270245.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3314329 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9W_06765 | XZM83417.1 | OG0000061 | CP198042.1:1452473–1453825 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9W_12675 | XZM81790.1 | OG0000131 | CP198042.1:2793216–2794169 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9W_06775 | XZM83419.1 | OG0000212 | CP198042.1:1454259–1454750 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9W_00595 | XZM82259.1 | OG0000229 | CP198042.1:111267–112115 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9W_01295 | XZM82371.1 | OG0000234 | CP198042.1:241709–242887 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9W_06770 | XZM83418.1 | OG0000785 | CP198042.1:1453837–1454256 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9W_14095 | XZM82029.1 | OG0001124 | CP198042.1:3085363–3087960 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW9W_11620 | XZM81593.1 | OG0001228 | CP198042.1:2552347–2553870 - | L-lactate permease [Clostridium perfringens] |
| crtACSW9W_00575 | XZM82255.1 | OG0001394 | CP198042.1:107358–108140 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9W_12715 | XZM81798.1 | OG0001639 | CP198042.1:2804046–2804822 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.