Assembly
ASM5227025v1
BioProject PRJNA1294857 · BioSample SAMN50128584
GENOME-RESOLVED EVIDENCE
GCA_052270255.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3351717 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW91_14795 | XZM85110.1 | OG0000061 | CP198027.1:3246713–3248065 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW91_05785 | XZM86262.1 | OG0000131 | CP198027.1:1334647–1335600 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW91_14805 | XZM85112.1 | OG0000212 | CP198027.1:3248499–3248990 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW91_08505 | XZM83922.1 | OG0000229 | CP198027.1:1890057–1890905 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW91_09115 | XZM84017.1 | OG0000234 | CP198027.1:2007529–2008707 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW91_14800 | XZM85111.1 | OG0000785 | CP198027.1:3248077–3248496 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW91_07165 | XZM86496.1 | OG0001124 | CP198027.1:1621983–1624580 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW91_04590 | XZM86042.1 | OG0001228 | CP198027.1:1055968–1057491 - | L-lactate permease [Clostridium perfringens] |
| crtACSW91_08485 | XZM83918.1 | OG0001394 | CP198027.1:1886148–1886930 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW91_05825 | XZM86270.1 | OG0001639 | CP198027.1:1345481–1346257 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.