Assembly
ASM5227031v1
BioProject PRJNA1294857 · BioSample SAMN50128578
GENOME-RESOLVED EVIDENCE
GCA_052270315.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3367141 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9V_08280 | XZN01775.1 | OG0000061 | CP198045.1:1737541–1738893 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9V_14210 | XZN02895.1 | OG0000131 | CP198045.1:3059594–3060547 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9V_08290 | XZN01777.1 | OG0000212 | CP198045.1:1739327–1739818 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9V_02165 | XZN03380.1 | OG0000229 | CP198045.1:412923–413771 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9V_02870 | XZN03493.1 | OG0000234 | CP198045.1:545041–546219 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9V_08285 | XZN01776.1 | OG0000785 | CP198045.1:1738905–1739324 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9V_00865 | XZN03149.1 | OG0001124 | CP198045.1:153786–156383 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW9V_13130 | XZN04459.1 | OG0001228 | CP198045.1:2816843–2818363 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSW9V_08330 | XZN01785.1 | OG0001328 | CP198045.1:1745884–1746459 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSW9V_02145 | XZN03376.1 | OG0001394 | CP198045.1:409014–409796 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9V_14250 | XZN02903.1 | OG0001639 | CP198045.1:3070419–3071195 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.