Assembly
ASM5227056v1
BioProject PRJNA1294857 · BioSample SAMN50128576
GENOME-RESOLVED EVIDENCE
GCA_052270565.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3733211 bp · GC 28.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9T_07640 | XZN07518.1 | OG0000061 | CP198058.1:1606541–1607893 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9T_14045 | XZN05779.1 | OG0000131 | CP198058.1:3059309–3060262 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9T_07650 | XZN07520.1 | OG0000212 | CP198058.1:1608327–1608818 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9T_01035 | XZN06277.1 | OG0000229 | CP198058.1:193859–194707 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9T_01945 | XZN06428.1 | OG0000234 | CP198058.1:363052–364230 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9T_07645 | XZN07519.1 | OG0000785 | CP198058.1:1607905–1608324 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9T_15600 | XZN06045.1 | OG0001124 | CP198058.1:3375051–3377648 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW9T_13035 | XZN05591.1 | OG0001228 | CP198058.1:2822466–2823989 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSW9T_07690 | XZN07528.1 | OG0001328 | CP198058.1:1614884–1615459 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSW9T_01015 | XZN06273.1 | OG0001394 | CP198058.1:189950–190732 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9T_14085 | XZN05787.1 | OG0001639 | CP198058.1:3070140–3070916 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.