Assembly
ASM5227069v1
BioProject PRJNA1294857 · BioSample SAMN50128571
GENOME-RESOLVED EVIDENCE
GCA_052270695.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3486362 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9O_08155 | XZN11507.1 | OG0000061 | CP197850.1:1735890–1737242 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9O_14475 | XZN12730.1 | OG0000131 | CP197850.1:3166795–3167748 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9O_08165 | XZN11509.1 | OG0000212 | CP197850.1:1737676–1738167 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9O_02015 | XZN13201.1 | OG0000229 | CP197850.1:390473–391321 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9O_02620 | XZN13295.1 | OG0000234 | CP197850.1:505648–506826 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9O_08160 | XZN11508.1 | OG0000785 | CP197850.1:1737254–1737673 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9O_00710 | XZN12969.1 | OG0001124 | CP197850.1:131247–133844 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW9O_13430 | XZN12535.1 | OG0001228 | CP197850.1:2920760–2922283 - | L-lactate permease [Clostridium perfringens] |
| crtACSW9O_01995 | XZN13197.1 | OG0001394 | CP197850.1:386565–387347 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9O_14530 | XZN12741.1 | OG0001639 | CP197850.1:3180720–3181496 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.