Assembly
ASM5227103v1
BioProject PRJNA1294857 · BioSample SAMN50128566
GENOME-RESOLVED EVIDENCE
GCA_052271035.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3642277 bp · GC 28.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9J_08435 | XZN14628.1 | OG0000061 | CP197885.1:1781028–1782380 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9J_14895 | XZN15871.1 | OG0000131 | CP197885.1:3237936–3238889 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9J_08445 | XZN14630.1 | OG0000212 | CP197885.1:1782814–1783305 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9J_02180 | XZN16363.1 | OG0000229 | CP197885.1:423931–424779 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9J_02790 | XZN16455.1 | OG0000234 | CP197885.1:539706–540884 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9J_08440 | XZN14629.1 | OG0000785 | CP197885.1:1782392–1782811 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9J_00890 | XZN16134.1 | OG0001124 | CP197885.1:165035–167632 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW9J_13805 | XZN15670.1 | OG0001228 | CP197885.1:2985657–2987180 - | L-lactate permease [Clostridium perfringens] |
| crtACSW9J_02160 | XZN16359.1 | OG0001394 | CP197885.1:420022–420804 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9J_14935 | XZN15879.1 | OG0001639 | CP197885.1:3248764–3249540 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.