Assembly
ASM5227118v1
BioProject PRJNA1294857 · BioSample SAMN50128573
GENOME-RESOLVED EVIDENCE
GCA_052271185.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3611740 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9Q_07160 | XZN23762.1 | OG0000061 | CP197836.1:1620209–1621561 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9Q_00775 | XZN22534.1 | OG0000131 | CP197836.1:165227–166180 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9Q_07150 | XZN23760.1 | OG0000212 | CP197836.1:1619284–1619775 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9Q_13815 | XZN22054.1 | OG0000229 | CP197836.1:3037041–3037889 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9Q_13070 | XZN21933.1 | OG0000234 | CP197836.1:2902091–2903269 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9Q_07155 | XZN23761.1 | OG0000785 | CP197836.1:1619778–1620197 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9Q_15120 | XZN22285.1 | OG0001124 | CP197836.1:3295574–3298171 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW9Q_01845 | XZN22732.1 | OG0001228 | CP197836.1:413910–415433 + | L-lactate permease [Clostridium perfringens] |
| crtACSW9Q_13835 | XZN22058.1 | OG0001394 | CP197836.1:3041016–3041798 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9Q_00735 | XZN22526.1 | OG0001639 | CP197836.1:154571–155347 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.