Assembly
ASM5227248v1
BioProject PRJNA1294857 · BioSample SAMN50128569
GENOME-RESOLVED EVIDENCE
GCA_052272485.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3867896 bp · GC 28.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9M_05415 | XZN10492.1 | OG0000061 | CP197857.1:1203076–1204428 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9M_12250 | XZN08754.1 | OG0000131 | CP197857.1:2715384–2716337 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9M_05425 | XZN10494.1 | OG0000212 | CP197857.1:1204862–1205353 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9M_15065 | XZN09244.1 | OG0000229 | CP197857.1:3284754–3285602 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9M_15720 | XZN09347.1 | OG0000234 | CP197857.1:3408867–3410045 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9M_05420 | XZN10493.1 | OG0000785 | CP197857.1:1204440–1204859 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9M_13765 | XZN09013.1 | OG0001124 | CP197857.1:3025646–3028243 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSW9M_15045 | XZN09240.1 | OG0001394 | CP197857.1:3280846–3281628 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9M_12305 | XZN08765.1 | OG0001639 | CP197857.1:2729303–2730079 - | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.