Assembly
ASM5227271v1
BioProject PRJNA1294857 · BioSample SAMN50128570
GENOME-RESOLVED EVIDENCE
GCA_052272715.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3508204 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9N_07565 | XZN20715.1 | OG0000061 | CP197852.1:1680118–1681470 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9N_00670 | XZN19393.1 | OG0000131 | CP197852.1:151601–152554 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9N_07555 | XZN20713.1 | OG0000212 | CP197852.1:1679169–1679684 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9N_13745 | XZN18909.1 | OG0000229 | CP197852.1:3009312–3010160 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9N_12990 | XZN18788.1 | OG0000234 | CP197852.1:2871795–2872973 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9N_07560 | XZN20714.1 | OG0000785 | CP197852.1:1679687–1680106 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9N_15035 | XZN19138.1 | OG0001124 | CP197852.1:3266895–3269492 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW9N_01690 | XZN19581.1 | OG0001228 | CP197852.1:392570–394093 + | L-lactate permease [Clostridium perfringens] |
| crtACSW9N_13765 | XZN18913.1 | OG0001394 | CP197852.1:3013287–3014069 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9N_00630 | XZN19385.1 | OG0001639 | CP197852.1:140948–141724 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.