Assembly
ASM5227423v1
BioProject PRJNA1294857 · BioSample SAMN50128563
GENOME-RESOLVED EVIDENCE
GCA_052274235.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3384813 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9G_06240 | XZN39328.1 | OG0000061 | CP197898.1:1462426–1463778 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9G_00335 | XZN38195.1 | OG0000131 | CP197898.1:83644–84597 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9G_06230 | XZN39326.1 | OG0000212 | CP197898.1:1461501–1461992 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9G_12360 | XZN37714.1 | OG0000229 | CP197898.1:2801326–2802174 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9G_11750 | XZN37620.1 | OG0000234 | CP197898.1:2683457–2684635 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9G_06235 | XZN39327.1 | OG0000785 | CP197898.1:1461995–1462414 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9G_13655 | XZN37942.1 | OG0001124 | CP197898.1:3057390–3059987 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW9G_01415 | XZN38395.1 | OG0001228 | CP197898.1:335980–337503 + | L-lactate permease [Clostridium perfringens] |
| crtACSW9G_12380 | XZN37718.1 | OG0001394 | CP197898.1:2805301–2806083 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9G_00275 | XZN38183.1 | OG0001639 | CP197898.1:68213–68989 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.