Assembly
ASM5227497v1
BioProject PRJNA1294857 · BioSample SAMN50128565
GENOME-RESOLVED EVIDENCE
GCA_052274975.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3395628 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9I_08690 | XZN42911.1 | OG0000061 | CP197893.1:1828799–1830151 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9I_14655 | XZN44059.1 | OG0000131 | CP197893.1:3219887–3220840 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9I_08700 | XZN42913.1 | OG0000212 | CP197893.1:1830585–1831076 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9I_02455 | XZN44523.1 | OG0000229 | CP197893.1:485338–486186 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9I_03070 | XZN44617.1 | OG0000234 | CP197893.1:601738–602916 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9I_08695 | XZN42912.1 | OG0000785 | CP197893.1:1830163–1830582 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9I_01155 | XZN44293.1 | OG0001124 | CP197893.1:225968–228565 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW9I_13525 | XZN43847.1 | OG0001228 | CP197893.1:2954276–2955799 - | L-lactate permease [Clostridium perfringens] |
| crtACSW9I_02435 | XZN44519.1 | OG0001394 | CP197893.1:481429–482211 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9I_14695 | XZN44067.1 | OG0001639 | CP197893.1:3230730–3231506 - | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.