Assembly
ASM5227575v1
BioProject PRJNA1294857 · BioSample SAMN50128547
GENOME-RESOLVED EVIDENCE
GCA_052275755.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3378930 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW80_02840 | XZN50909.1 | OG0000061 | CP197738.1:643733–645085 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW80_11795 | XZN49787.1 | OG0000131 | CP197738.1:2550996–2551949 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW80_02830 | XZN50907.1 | OG0000212 | CP197738.1:642808–643299 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW80_08955 | XZN49293.1 | OG0000229 | CP197738.1:1977154–1978002 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW80_08345 | XZN49200.1 | OG0000234 | CP197738.1:1860991–1862169 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW80_02835 | XZN50908.1 | OG0000785 | CP197738.1:643302–643721 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW80_10255 | XZN49523.1 | OG0001124 | CP197738.1:2234570–2237167 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW80_12905 | XZN49993.1 | OG0001228 | CP197738.1:2809588–2811111 + | L-lactate permease [Clostridium perfringens] |
| crtACSW80_08975 | XZN49297.1 | OG0001394 | CP197738.1:1981129–1981911 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW80_11755 | XZN49779.1 | OG0001639 | CP197738.1:2540341–2541117 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.