Assembly
ASM5227630v1
BioProject PRJNA1294857 · BioSample SAMN50128555
GENOME-RESOLVED EVIDENCE
GCA_052276305.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3427024 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW88_06590 | XZN54639.1 | OG0000061 | CP197949.1:1514531–1515883 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW88_00670 | XZN53500.1 | OG0000131 | CP197949.1:151776–152729 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW88_06580 | XZN54637.1 | OG0000212 | CP197949.1:1513606–1514097 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW88_13095 | XZN53041.1 | OG0000229 | CP197949.1:2907874–2908722 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW88_12485 | XZN52946.1 | OG0000234 | CP197949.1:2790396–2791574 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW88_06585 | XZN54638.1 | OG0000785 | CP197949.1:1514100–1514519 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW88_14395 | XZN53271.1 | OG0001124 | CP197949.1:3165158–3167755 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW88_01690 | XZN53690.1 | OG0001228 | CP197949.1:391511–393034 + | L-lactate permease [Clostridium perfringens] |
| rnfAACSW88_06540 | XZN54629.1 | OG0001328 | CP197949.1:1506965–1507540 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSW88_13115 | XZN53045.1 | OG0001394 | CP197949.1:2911849–2912631 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW88_00630 | XZN53492.1 | OG0001639 | CP197949.1:141118–141894 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.