Assembly
ASM5227649v1
BioProject PRJNA1294857 · BioSample SAMN50128557
GENOME-RESOLVED EVIDENCE
GCA_052276495.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3597579 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9A_09060 | XZN55139.1 | OG0000061 | CP197933.1:1923596–1924948 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9A_15040 | XZN56266.1 | OG0000131 | CP197933.1:3280569–3281522 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9A_09070 | XZN55141.1 | OG0000212 | CP197933.1:1925382–1925873 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9A_02745 | XZN56768.1 | OG0000229 | CP197933.1:546207–547055 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9A_03470 | XZN56884.1 | OG0000234 | CP197933.1:681232–682410 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9A_09065 | XZN55140.1 | OG0000785 | CP197933.1:1924960–1925379 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9A_01425 | XZN56534.1 | OG0001124 | CP197933.1:283881–286478 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW9A_13980 | XZN56073.1 | OG0001228 | CP197933.1:3036716–3038239 - | L-lactate permease [Clostridium perfringens] |
| crtACSW9A_02725 | XZN56764.1 | OG0001394 | CP197933.1:542298–543080 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9A_15085 | XZN56275.1 | OG0001639 | CP197933.1:3291387–3292163 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.