Assembly
ASM5227717v1
BioProject PRJNA1294857 · BioSample SAMN50128551
GENOME-RESOLVED EVIDENCE
GCA_052277175.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3767207 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW84_00090 | XZN62506.1 | OG0000061 | CP197965.1:15327–16679 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW84_09485 | XZN61194.1 | OG0000131 | CP197965.1:2018481–2019434 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW84_00080 | XZN62504.1 | OG0000212 | CP197965.1:14402–14893 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW84_06670 | XZN63749.1 | OG0000229 | CP197965.1:1449214–1450062 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW84_06015 | XZN63647.1 | OG0000234 | CP197965.1:1324771–1325949 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW84_00085 | XZN62505.1 | OG0000785 | CP197965.1:14896–15315 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW84_07970 | XZN63980.1 | OG0001124 | CP197965.1:1706575–1709172 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSW84_06690 | XZN63753.1 | OG0001394 | CP197965.1:1453188–1453970 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW84_09430 | XZN61183.1 | OG0001639 | CP197965.1:2004739–2005515 + | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.