Assembly
ASM5239949v1
BioProject PRJNA1310739 · BioSample SAMN50780118
GENOME-RESOLVED EVIDENCE
GCA_052399495.1
Megasphaera elsdenii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2768644 bp · GC 52.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| coatWP_041647040.1 · CoA transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 236.900 / 0.97200 | Annotation: specific_product_name |
| etfBWP_014017063.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 334.400 / 1.00000 | Bridge orthogroup OG0001139 |
| fabDWP_027894706.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 348.300 / 0.98100 | Annotation: gene_symbol |
| fabFWP_014015037.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 610.100 / 0.99300 | Annotation: gene_symbol |
| fabGWP_014015040.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 284.100 / 0.99600 | Bridge orthogroup OG0000008 |
| fabZWP_014015064.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 144.500 / 0.75400 | Bridge orthogroup OG0000074 |
| lctPWP_014015704.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 628.500 / 0.98800 | Bridge orthogroup OG0000731 |
| lctPWP_014017157.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 559.200 / 0.98600 | Bridge orthogroup OG0000731 |
| rnfAWP_014015121.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 283.100 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfBWP_022497725.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 299.100 / 0.93900 | Bridge orthogroup OG0001404 |
| rnfCWP_014015125.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 408.400 / 0.76900 | Bridge orthogroup OG0001114 |
| rnfDWP_014015124.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 481.200 / 0.96500 | Bridge orthogroup OG0001182 |
| rnfEWP_022497724.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 306.100 / 0.98600 | Bridge orthogroup OG0001153 |
| rnfGWP_014015123.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 189.900 / 0.91800 | Bridge orthogroup OG0001292 |
| thlWP_014015981.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 625.800 / 0.99700 | Bridge orthogroup OG0005114 |
| thlWP_014015982.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 573.200 / 0.99700 | Bridge orthogroup OG0005114 |
| accCWP_074787045.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 519.700 / 0.98400 | Profile only |
| bcdWP_014017064.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 528.800 / 1.00000 | Profile only |
| bcdWP_014015428.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 521.600 / 1.00000 | Profile only |
| bcdWP_014015710.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 512.600 / 1.00000 | Profile only |
| bcdWP_444707069.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 460.300 / 0.99500 | Profile only |
| bcdWP_022497660.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 444.900 / 0.99200 | Profile only |
| crtWP_022497707.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 383.500 / 1.00000 | Annotation: specific_product_name |
| crtWP_014015429.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 376.900 / 1.00000 | Annotation: specific_product_name |
| crtWP_444707321.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.800 / 0.99600 | Annotation: specific_product_name |
| etfAWP_014017062.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 452.200 / 0.99400 | Profile only |
| etfAWP_014016927.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 316.900 / 0.97600 | Profile only |
| etfBWP_014016928.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 239.700 / 0.99200 | Profile only |
| fabGWP_444707279.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 201.600 / 0.99200 | Profile only |
| fabGWP_014016735.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.100 / 0.96000 | Profile only |
| fabGWP_444706978.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 78.800 / 0.83900 | Bridge orthogroup OG0000242 |
| fabHWP_014015042.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 297.700 / 0.98200 | Profile only |
| fabKWP_014015038.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 223.900 / 0.93900 | Profile only |
| fabLWP_014015040.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 236.700 / 0.97200 | Profile only |
| fabLWP_444707279.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.500 / 0.98400 | Profile only |
| fabLWP_014016735.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 153.100 / 0.96000 | Profile only |
| hbdWP_014016399.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 409.100 / 0.99300 | Profile only |
| ldhWP_444707422.1 · lactate/malate family dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 274.500 / 0.99100 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.