Assembly
ASM5244286v1
BioProject PRJNA1271440 · BioSample SAMN48866005
GENOME-RESOLVED EVIDENCE
GCA_052442865.1
Caproiciproducens puteiluti · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3941529 bp · GC 51.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_444642877.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 133.900 / 0.98800 | Annotation: gene_symbol |
| accCWP_444642881.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 667.000 / 0.99100 | Annotation: gene_symbol |
| accDWP_141826823.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 391.700 / 0.93900 | Bridge orthogroup OG0000844 |
| bcdWP_038325343.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 582.600 / 0.99500 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_444643049.1 · acyl-CoA dehydrogenase family protein | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 445.500 / 0.99500 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_444641902.1 · acyl-CoA dehydrogenase family protein | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 386.900 / 0.98700 | Annotation: bcd_etfAB_neighborhood |
| crtWP_444645477.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 331.500 / 0.96500 | Bridge orthogroup OG0002531 |
| etfAWP_444643042.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 432.500 / 0.98200 | Bridge orthogroup OG0001385 |
| etfAWP_038325342.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 426.700 / 0.97900 | Bridge orthogroup OG0001385 |
| etfAWP_444641912.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 419.600 / 0.97900 | Bridge orthogroup OG0001385 |
| etfBWP_444643044.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 354.300 / 0.99200 | Bridge orthogroup OG0001139 |
| etfBWP_444641910.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 338.000 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_444641453.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 337.400 / 1.00000 | Bridge orthogroup OG0001139 |
| fabFWP_444642875.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 584.900 / 0.99300 | Annotation: gene_symbol |
| fabGWP_444642871.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 250.000 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_444642867.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 485.100 / 0.99700 | Annotation: gene_symbol |
| fabZWP_444642879.1 · 3-hydroxyacyl-ACP dehydratase FabZ | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 95.600 / 0.74900 | Bridge orthogroup OG0000074 |
| hbdWP_444645648.1 · 3-hydroxybutyryl-CoA dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 429.500 / 0.98600 | Bridge orthogroup OG0013485 |
| hbdWP_444643077.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 242.000 / 0.99600 | Bridge orthogroup OG0000153 |
| lctPWP_038325338.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 613.000 / 0.98200 | Bridge orthogroup OG0000731 |
| ldhWP_444642624.1 · L-lactate dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 357.200 / 0.98100 | Bridge orthogroup OG0001800 |
| rnfAWP_038324790.1 · RnfABCDGE type electron transport complex subunit A | High | Approved candidatestrong profile and bridge orthogroup support | 253.300 / 0.99000 | Bridge orthogroup OG0001169 |
| rnfBWP_444641130.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 264.500 / 0.93600 | Bridge orthogroup OG0001404 |
| rnfCWP_444641126.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 332.300 / 0.73700 | Bridge orthogroup OG0001114 |
| rnfDWP_038324788.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 356.300 / 0.94400 | Bridge orthogroup OG0001182 |
| rnfEWP_444641128.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 260.600 / 0.95200 | Bridge orthogroup OG0001153 |
| rnfGWP_052010635.1 · FMN-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 146.800 / 0.93300 | Bridge orthogroup OG0001292 |
| thlWP_444643067.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 581.600 / 1.00000 | Bridge orthogroup OG0005114 |
| bcdWP_038324084.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 635.400 / 0.99200 | Profile only |
| bcdWP_444643063.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 584.900 / 0.99500 | Profile only |
| bcdWP_444644240.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 576.800 / 0.99700 | Profile only |
| crtWP_444641898.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.800 / 0.99600 | Annotation: specific_product_name |
| etfAWP_038324086.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 439.300 / 0.98800 | Profile only |
| etfBWP_444645480.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 356.800 / 0.99600 | Profile only |
| fabGWP_444644011.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 264.000 / 1.00000 | Profile only |
| fabGWP_141827026.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 239.700 / 0.97200 | Profile only |
| fabGWP_444643072.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 215.300 / 0.97600 | Profile only |
| fabGWP_444643849.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 212.100 / 0.98800 | Profile only |
| fabGWP_444644148.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 209.800 / 0.98400 | Profile only |
| fabGWP_444641466.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.700 / 0.98800 | Profile only |
| fabGWP_052010496.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 187.900 / 0.99200 | Profile only |
| fabGWP_444641641.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 186.300 / 0.98800 | Profile only |
| fabGWP_444641584.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.200 / 0.98000 | Profile only |
| fabGWP_444645099.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.900 / 0.98800 | Profile only |
| fabGWP_444643075.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 177.100 / 0.99200 | Bridge orthogroup OG0000008 |
| fabGWP_444642619.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 114.000 / 0.76600 | Bridge orthogroup OG0000242 |
| fabGWP_141825691.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 113.900 / 0.77800 | Profile only |
| fabGWP_141825692.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 112.200 / 0.78200 | Profile only |
| fabHWP_444642865.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 240.100 / 0.98800 | Profile only |
| fabKWP_444641906.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 335.600 / 0.99000 | Profile only |
| fabKWP_444643061.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 295.000 / 0.98100 | Profile only |
| fabLWP_444643072.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.400 / 0.98400 | Profile only |
| fabLWP_141827026.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.200 / 0.96000 | Profile only |
| fabLWP_444644011.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 203.000 / 0.97200 | Profile only |
| fabLWP_444641584.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 193.400 / 0.98800 | Profile only |
| fabLWP_444641466.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.800 / 0.97200 | Profile only |
| fabLWP_052010496.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.800 / 0.98000 | Profile only |
| fabLWP_444643849.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 167.600 / 0.97200 | Profile only |
| fabLWP_444644148.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 165.700 / 0.97200 | Profile only |
| fabLWP_444641641.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 162.400 / 0.97600 | Profile only |
| fabLWP_444643075.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 155.500 / 0.98400 | Profile only |
| fabLWP_444645099.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 153.400 / 0.97600 | Profile only |
| fabLWP_141825691.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 129.800 / 0.78200 | Profile only |
| hbdWP_038324083.1 · 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 408.800 / 0.98900 | Profile only |
| rnfCWP_444641509.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 446.000 / 0.99100 | Profile only |
| thlWP_038324076.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 613.800 / 0.99200 | Profile only |
| thlWP_444641689.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 604.500 / 0.99700 | Profile only |
| fabLWP_444642871.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 209.200 / 0.97200 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.