Assembly
ASM5244333v1
BioProject PRJNA1271450 · BioSample SAMN48866043
GENOME-RESOLVED EVIDENCE
GCA_052443335.1
Caproiciproducens lactatisolvens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3190996 bp · GC 52.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_444659048.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 390.600 / 0.95600 | Bridge orthogroup OG0001120 |
| accBWP_444659044.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 136.500 / 0.98800 | Annotation: gene_symbol |
| accCWP_444659046.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 656.300 / 0.99100 | Annotation: gene_symbol |
| accDWP_444659047.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 385.400 / 0.94200 | Bridge orthogroup OG0000844 |
| bcdWP_444658264.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 581.800 / 0.99500 | Annotation: bcd_etfAB_neighborhood |
| crtWP_444660116.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 329.500 / 0.96500 | Bridge orthogroup OG0002531 |
| etfAWP_275716399.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 423.800 / 0.98200 | Bridge orthogroup OG0001385 |
| etfBWP_275716401.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 339.500 / 1.00000 | Bridge orthogroup OG0001139 |
| fabFWP_444659043.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 577.400 / 0.99300 | Annotation: gene_symbol |
| fabGWP_444659041.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 250.600 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_275714961.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 481.900 / 0.99700 | Annotation: gene_symbol |
| fabZWP_444659045.1 · 3-hydroxyacyl-ACP dehydratase FabZ | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 97.300 / 0.74900 | Bridge orthogroup OG0000074 |
| lctPWP_444658261.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 609.500 / 0.98200 | Bridge orthogroup OG0000731 |
| ldhWP_444658919.1 · L-lactate dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 361.700 / 0.98100 | Bridge orthogroup OG0001800 |
| rnfAWP_444657999.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 250.100 / 0.99000 | Bridge orthogroup OG0001169 |
| rnfBWP_444658000.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 265.700 / 0.93600 | Bridge orthogroup OG0001404 |
| rnfCWP_444657995.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 332.900 / 0.73200 | Bridge orthogroup OG0001114 |
| rnfDWP_444657996.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 364.200 / 0.94400 | Bridge orthogroup OG0001182 |
| rnfEWP_444657998.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 259.300 / 0.95200 | Bridge orthogroup OG0001153 |
| rnfGWP_444657997.1 · FMN-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 142.800 / 0.93800 | Bridge orthogroup OG0001292 |
| bcdWP_444660120.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 632.400 / 0.99200 | Profile only |
| bcdWP_444659522.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 580.600 / 0.99700 | Profile only |
| etfAWP_444660124.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 439.400 / 0.98800 | Profile only |
| etfBWP_444660122.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 355.100 / 0.99600 | Profile only |
| fabGWP_444659219.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 237.100 / 0.97200 | Profile only |
| fabGWP_444659406.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 217.300 / 0.98800 | Profile only |
| fabGWP_275717953.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 210.400 / 0.98400 | Profile only |
| fabGWP_444659246.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 210.100 / 0.98000 | Profile only |
| fabGWP_444658915.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 116.200 / 0.76200 | Bridge orthogroup OG0000242 |
| fabHWP_275714963.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 237.600 / 0.98800 | Profile only |
| fabLWP_444659219.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 207.100 / 0.96000 | Profile only |
| fabLWP_444659246.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.400 / 0.97600 | Profile only |
| fabLWP_444659406.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 164.900 / 0.97200 | Profile only |
| fabLWP_275717953.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 160.700 / 0.97200 | Profile only |
| hbdWP_444660118.1 · 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 409.900 / 0.98900 | Profile only |
| rnfCWP_444658300.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 447.700 / 0.99100 | Profile only |
| thlWP_444660114.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 613.100 / 0.99200 | Profile only |
| fabLWP_444659041.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 209.500 / 0.97200 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.