Assembly
ASM5265728v1
BioProject PRJNA1320638 · BioSample SAMN51154702
GENOME-RESOLVED EVIDENCE
GCA_052657285.1
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5792971 bp · GC 30.000%
Completeness 88.170% · contamination 5.410%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACUH7Y_05300 | YAF33206.1 | OG0000061 | CP199770.1:1182608–1183960 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii] |
| ldhACUH7Y_04985 | YAF33143.1 | OG0000131 | CP199770.1:1110975–1111925 + | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhACUH7Y_20300 | YAF31132.1 | OG0000131 | CP199770.1:4402680–4403630 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhACUH7Y_24405 | YAF31923.1 | OG0000131 | CP199770.1:5442631–5443578 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| accBACUH7Y_05290 | YAF33204.1 | OG0000212 | CP199770.1:1181646–1182161 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium beijerinckii] |
| hbdACUH7Y_01665 | YAF32528.1 | OG0000229 | CP199770.1:347468–348316 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| thlACUH7Y_02340 | YAF32639.1 | OG0000234 | CP199770.1:483431–484612 + | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii] |
| thlACUH7Y_18615 | YAF30807.1 | OG0000234 | CP199770.1:4030712–4031890 - | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii] |
| fabZACUH7Y_05295 | YAF33205.1 | OG0000785 | CP199770.1:1182165–1182593 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium beijerinckii] |
| adhEACUH7Y_01565 | YAF32509.1 | OG0001124 | CP199770.1:319723–322317 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium beijerinckii] |
| lctPACUH7Y_14850 | YAF30095.1 | OG0001228 | CP199770.1:3237586–3239121 - | L-lactate permease [Clostridium beijerinckii] |
| rnfAACUH7Y_12735 | YAF34626.1 | OG0001328 | CP199770.1:2734943–2735518 + | electron transport complex protein RnfA [Clostridium beijerinckii] |
| crtACUH7Y_01645 | YAF32524.1 | OG0001394 | CP199770.1:343445–344230 + | short-chain-enoyl-CoA hydratase [Clostridium beijerinckii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.