Assembly
ASM5280569v1
BioProject PRJNA1328834 · BioSample SAMN51360987
GENOME-RESOLVED EVIDENCE
GCA_052805695.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4611195 bp · GC 29.000%
Completeness 95.580% · contamination 1.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACUV59_02085 | MGR2711351.1 | OG0000061 | CM127841.1:471261–472613 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCACUV59_03260 | MGR2711583.1 | OG0000061 | CM127841.1:748699–750045 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhACUV59_02440 | MGR2711422.1 | OG0000131 | CM127841.1:549121–550074 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACUV59_11210 | MGR2713043.1 | OG0000131 | CM127841.1:2538524–2539462 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACUV59_16975 | MGR2714176.1 | OG0000131 | CM127841.1:3766317–3767270 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACUV59_17485 | MGR2714274.1 | OG0000131 | JBRBNN010000002.1:65457–66401 - | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| accBACUV59_02095 | MGR2711353.1 | OG0000212 | CM127841.1:473054–473560 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| accBACUV59_03265 | MGR2711584.1 | OG0000212 | CM127841.1:750088–750549 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdACUV59_06050 | MGR2712098.1 | OG0000229 | CM127841.1:1341246–1342094 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlACUV59_05440 | MGR2712006.1 | OG0000234 | CM127841.1:1226292–1227473 - | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZACUV59_02090 | MGR2711352.1 | OG0000785 | CM127841.1:472622–473050 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEACUV59_08480 | MGR2712528.1 | OG0001124 | CM127841.1:1850936–1853566 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPACUV59_00255 | MGR2710986.1 | OG0001228 | CM127841.1:65721–67262 - | L-lactate permease [Clostridium butyricum] |
| crtACUV59_06070 | MGR2712102.1 | OG0001394 | CM127841.1:1345310–1346095 - | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.