Assembly
ASM5295391v1
BioProject PRJNA1293899 · BioSample SAMN50083105
GENOME-RESOLVED EVIDENCE
GCA_052953915.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3176553 bp · GC 32.500%
Completeness 98.450% · contamination 0.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSVC9_08655 | YAV98755.1 | OG0000061 | CP196861.1:1756357–1757700 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. LBM24168] |
| accCACSVC9_14255 | YAV99785.1 | OG0000061 | CP196861.1:2869522–2870871 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. LBM24168] |
| ldhACSVC9_01600 | YAW00337.1 | OG0000131 | CP196861.1:333644–334597 + | L-lactate dehydrogenase [Clostridium sp. LBM24168] |
| accBACSVC9_08660 | YAV98756.1 | OG0000212 | CP196861.1:1757703–1758155 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. LBM24168] |
| accBACSVC9_14265 | YAV99787.1 | OG0000212 | CP196861.1:2871436–2871927 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. LBM24168] |
| hbdACSVC9_04170 | YAW00824.1 | OG0000229 | CP196861.1:862605–863453 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. LBM24168] |
| thlACSVC9_15515 | YAV99991.1 | OG0000234 | CP196861.1:3115277–3116464 + | acetyl-CoA C-acetyltransferase [Clostridium sp. LBM24168] |
| fabZACSVC9_14260 | YAV99786.1 | OG0000785 | CP196861.1:2870896–2871351 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. LBM24168] |
| lctPACSVC9_06840 | YAW01321.1 | OG0001228 | CP196861.1:1371615–1373153 + | L-lactate permease [Clostridium sp. LBM24168] |
| rnfAACSVC9_04205 | YAW00830.1 | OG0001328 | CP196861.1:869786–870367 + | electron transport complex protein RnfA [Clostridium sp. LBM24168] |
| crtACSVC9_12190 | YAV99412.1 | OG0001394 | CP196861.1:2449052–2449831 - | short-chain-enoyl-CoA hydratase [Clostridium sp. LBM24168] |
| crtACSVC9_12195 | YAV99413.1 | OG0001394 | CP196861.1:2449936–2450715 - | short-chain-enoyl-CoA hydratase [Clostridium sp. LBM24168] |
| crtACSVC9_13195 | YAV99597.1 | OG0001639 | CP196861.1:2664041–2664817 - | enoyl-CoA hydratase-related protein [Clostridium sp. LBM24168] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.