Assembly
ASM5297286v1
BioProject PRJNA1234389 · BioSample SAMN47296927
GENOME-RESOLVED EVIDENCE
GCA_052972865.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3281136 bp · GC 28.500%
Completeness 98.430% · contamination 4.740%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACOAE6_06565 | YBB75767.1 | OG0000061 | CP184734.1:1522013–1523365 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACOAE6_00670 | YBB74637.1 | OG0000131 | CP184734.1:151573–152526 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACOAE6_06555 | YBB75765.1 | OG0000212 | CP184734.1:1521088–1521579 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACOAE6_12590 | YBB74169.1 | OG0000229 | CP184734.1:2831926–2832774 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACOAE6_11985 | YBB74075.1 | OG0000234 | CP184734.1:2714604–2715782 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACOAE6_06560 | YBB75766.1 | OG0000785 | CP184734.1:1521582–1522001 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACOAE6_13890 | YBB74400.1 | OG0001124 | CP184734.1:3089164–3091761 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACOAE6_01760 | YBB74840.1 | OG0001228 | CP184734.1:405535–407058 + | L-lactate permease [Clostridium perfringens] |
| crtACOAE6_12610 | YBB74173.1 | OG0001394 | CP184734.1:2835901–2836683 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACOAE6_00630 | YBB74629.1 | OG0001639 | CP184734.1:140921–141697 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.