Assembly
ASM5297483v1
BioProject PRJNA1236515 · BioSample SAMN47393571
GENOME-RESOLVED EVIDENCE
GCA_052974835.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3316286 bp · GC 28.500%
Completeness 96.430% · contamination 3.470%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACOERK_06760 | YBB85799.1 | OG0000061 | CP184777.1:1527385–1528737 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACOERK_00700 | YBB84633.1 | OG0000131 | CP184777.1:156797–157750 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACOERK_06750 | YBB85797.1 | OG0000212 | CP184777.1:1526460–1526951 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACOERK_12900 | YBB84148.1 | OG0000229 | CP184777.1:2870672–2871520 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACOERK_12290 | YBB84053.1 | OG0000234 | CP184777.1:2754526–2755704 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACOERK_06755 | YBB85798.1 | OG0000785 | CP184777.1:1526954–1527373 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACOERK_14200 | YBB84379.1 | OG0001124 | CP184777.1:3128218–3130815 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACOERK_12920 | YBB84152.1 | OG0001394 | CP184777.1:2874647–2875429 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACOERK_00660 | YBB84625.1 | OG0001639 | CP184777.1:146153–146929 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.