Assembly
ASM5330901v1
BioProject PRJNA1354415 · BioSample SAMN52944066
GENOME-RESOLVED EVIDENCE
GCA_053309015.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3386428 bp · GC 28.500%
Completeness 98.130% · contamination 4.560%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACVXHI_06970 | MGU0354287.1 | OG0000061 | CM129995.1:1585179–1586531 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACVXHI_00670 | MGU0353053.1 | OG0000131 | CM129995.1:151224–152177 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACVXHI_06960 | MGU0354285.1 | OG0000212 | CM129995.1:1584254–1584745 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACVXHI_13405 | MGU0355514.1 | OG0000229 | CM129995.1:2967140–2967988 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACVXHI_12790 | MGU0355419.1 | OG0000234 | CM129995.1:2849698–2850876 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACVXHI_06965 | MGU0354286.1 | OG0000785 | CM129995.1:1584748–1585167 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACVXHI_14785 | MGU0355755.1 | OG0001124 | CM129995.1:3238231–3240828 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACVXHI_01775 | MGU0353264.1 | OG0001228 | CM129995.1:405589–407112 + | L-lactate permease [Clostridium perfringens] |
| crtACVXHI_13425 | MGU0355518.1 | OG0001394 | CM129995.1:2971115–2971897 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACVXHI_00630 | MGU0353045.1 | OG0001639 | CM129995.1:140567–141343 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.