Assembly
ASM5357198v1
BioProject PRJNA1282035 · BioSample SAMN49604817
GENOME-RESOLVED EVIDENCE
GCA_053571985.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2823133 bp · GC 27.500%
Completeness 97.830% · contamination 1.710%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACUN06_06875 | YBW11559.1 | OG0000061 | CP199832.1:1408826–1410169 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. ETTB3] |
| ldhACUN06_09075 | YBW09553.1 | OG0000131 | CP199832.1:1835122–1836069 + | L-lactate dehydrogenase [Clostridium sp. ETTB3] |
| accBACUN06_06885 | YBW11561.1 | OG0000212 | CP199832.1:1410639–1411115 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. ETTB3] |
| hbdACUN06_01835 | YBW10668.1 | OG0000229 | CP199832.1:383065–383913 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. ETTB3] |
| thlACUN06_02305 | YBW10733.1 | OG0000234 | CP199832.1:466784–467965 + | acetyl-CoA C-acetyltransferase [Clostridium sp. ETTB3] |
| fabZACUN06_06880 | YBW11560.1 | OG0000785 | CP199832.1:1410188–1410604 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. ETTB3] |
| adhEACUN06_09310 | YBW09598.1 | OG0001124 | CP199832.1:1891162–1893810 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. ETTB3] |
| crtACUN06_01815 | YBW10665.1 | OG0001394 | CP199832.1:379128–379937 + | short-chain-enoyl-CoA hydratase [Clostridium sp. ETTB3] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.