Assembly
ASM5357200v1
BioProject PRJNA1282035 · BioSample SAMN49604815
GENOME-RESOLVED EVIDENCE
GCA_053572005.1
Clostridium sp. ETTB3 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2820727 bp · GC 27.500%
Completeness 97.830% · contamination 1.710%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACUN07_06880 | YBW16539.1 | OG0000061 | CP199835.1:1406600–1407943 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. ETTB3] |
| ldhACUN07_09085 | YBW14539.1 | OG0000131 | CP199835.1:1832896–1833843 + | L-lactate dehydrogenase [Clostridium sp. ETTB3] |
| accBACUN07_06890 | YBW16541.1 | OG0000212 | CP199835.1:1408413–1408889 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. ETTB3] |
| hbdACUN07_01835 | YBW15647.1 | OG0000229 | CP199835.1:383041–383889 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. ETTB3] |
| thlACUN07_02285 | YBW15709.1 | OG0000234 | CP199835.1:464558–465739 + | acetyl-CoA C-acetyltransferase [Clostridium sp. ETTB3] |
| fabZACUN07_06885 | YBW16540.1 | OG0000785 | CP199835.1:1407962–1408378 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. ETTB3] |
| adhEACUN07_09325 | YBW14585.1 | OG0001124 | CP199835.1:1888936–1891584 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. ETTB3] |
| crtACUN07_01815 | YBW15644.1 | OG0001394 | CP199835.1:379104–379913 + | short-chain-enoyl-CoA hydratase [Clostridium sp. ETTB3] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.