BioChainDbA Comparative Genomics Resource for Microbial Chain Elongation and Medium Chain Fatty Acids Biosynthesis
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GENOME-RESOLVED EVIDENCE

GCA_053901425.1

Clostridium sp. · Complete Genome

View versioned NCBI assembly →

Assembly

ASM5390142v1

BioProject PRJNA1372436 · BioSample SAMN53543458

Quality metadata

Genome size 3616135 bp · GC 30.500%

Completeness 100.000% · contamination 4.040%

Pathway marker completeness

ModuleMarkersFractionCall
bcd_etf_module0/30.000Partial/absent
ethanol_entry_support0/10.000Partial/absent
fatty_acid_biosynthesis_core3/80.375Partial/absent
lactate_entry_support2/21.000Complete marker set
reverse_beta_oxidation_core3/40.750Partial/absent
rnf_complex1/60.167Partial/absent

Detected markers

MarkerFunctionCopies
rnfARnf complex subunit A1
accBacetyl-CoA carboxylase biotin carboxyl carrier protein1
accCacetyl-CoA carboxylase biotin carboxylase1
fabZ3-hydroxyacyl-ACP dehydratase1
lctPL-lactate permease2
ldhL-lactate dehydrogenase2
crtcrotonase/enoyl-CoA hydratase7
hbd3-hydroxybutyryl-CoA dehydrogenase2
thlacetyl-CoA acetyltransferase/thiolase2

Profile-HMM marker predictions

Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.

Marker / proteinConfidenceReview statusScore / coverageSupporting evidence
No profile-HMM predictions for this assembly.

Protein-level evidence

GeneProteinOrthogroupCoordinatesAnnotation
accCACWW38_09300MGY0373759.1OG0000061CM132773.1:1914900–1916243 -acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. JNZ J1-5]
ldhACWW38_12785MGY0374405.1OG0000131CM132773.1:2648035–2648982 -L-lactate dehydrogenase [Clostridium sp. JNZ J1-5]
ldhACWW38_15540MGY0374924.1OG0000131CM132773.1:3250187–3251134 -L-lactate dehydrogenase [Clostridium sp. JNZ J1-5]
accBACWW38_09310MGY0373761.1OG0000212CM132773.1:1916697–1917185 -acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. JNZ J1-5]
hbdACWW38_01305MGY0372213.1OG0000229CM132773.1:253488–254336 -3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. JNZ J1-5]
hbdACWW38_12865MGY0374419.1OG0000229CM132773.1:2664774–2665622 +3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. JNZ J1-5]
thlACWW38_12530MGY0374359.1OG0000234CM132773.1:2598828–2600003 +acetyl-CoA C-acetyltransferase [Clostridium sp. JNZ J1-5]
thlACWW38_12535MGY0374360.1OG0000234CM132773.1:2600474–2601649 +acetyl-CoA C-acetyltransferase [Clostridium sp. JNZ J1-5]
fabZACWW38_09305MGY0373760.1OG0000785CM132773.1:1916252–1916680 -3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. JNZ J1-5]
lctPACWW38_04215MGY0372779.1OG0001228CM132773.1:846696–848351 -L-lactate permease [Clostridium sp. JNZ J1-5]
lctPACWW38_13455MGY0374517.1OG0001228CM132773.1:2783351–2785006 +L-lactate permease [Clostridium sp. JNZ J1-5]
rnfAACWW38_04410MGY0372817.1OG0001328CM132773.1:895115–895690 -electron transport complex protein RnfA [Clostridium sp. JNZ J1-5]
crtACWW38_12845MGY0374415.1OG0001394CM132773.1:2660849–2661634 +short-chain-enoyl-CoA hydratase [Clostridium sp. JNZ J1-5]
crtACWW38_13460MGY0374518.1OG0001394CM132773.1:2785267–2786052 +short-chain-enoyl-CoA hydratase [Clostridium sp. JNZ J1-5]
crtACWW38_02120MGY0372371.1OG0001639CM132773.1:423941–424744 -enoyl-CoA hydratase-related protein [Clostridium sp. JNZ J1-5]
crtACWW38_13780MGY0374582.1OG0001639CM132773.1:2862694–2863473 +enoyl-CoA hydratase-related protein [Clostridium sp. JNZ J1-5]
crtACWW38_14555MGY0374733.1OG0001639CM132773.1:3022015–3022794 +enoyl-CoA hydratase-related protein [Clostridium sp. JNZ J1-5]
crtACWW38_04290MGY0372793.1OG0019521CM132773.1:864868–865647 -enoyl-CoA hydratase/isomerase family protein [Clostridium sp. JNZ J1-5]
crtACWW38_01725MGY0372295.1OG0032462CM132773.1:342560–343345 -enoyl-CoA hydratase/isomerase family protein [Clostridium sp. JNZ J1-5]

These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.