Assembly
ASM5413044v1
BioProject PRJNA1293914 · BioSample SAMN50083336
GENOME-RESOLVED EVIDENCE
GCA_054130445.1
Caproiciproducens sp. LBM24188 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2992167 bp · GC 48.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_457943443.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 393.700 / 0.95600 | Bridge orthogroup OG0001120 |
| accBWP_457943449.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 143.600 / 0.98800 | Annotation: gene_symbol |
| accBWP_457943937.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 143.400 / 0.99400 | Annotation: gene_symbol |
| accCWP_457943445.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 657.900 / 0.99100 | Annotation: gene_symbol |
| accDWP_457943444.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 376.700 / 0.91500 | Bridge orthogroup OG0000844 |
| crtWP_457942265.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 345.600 / 0.97300 | Bridge orthogroup OG0002531 |
| fabFWP_457943451.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 585.500 / 0.99300 | Annotation: gene_symbol |
| fabGWP_457943453.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 256.700 / 0.99200 | Bridge orthogroup OG0000008 |
| fabZWP_457943447.1 · 3-hydroxyacyl-ACP dehydratase FabZ | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 93.300 / 0.75400 | Bridge orthogroup OG0000074 |
| ldhWP_457944240.1 · L-lactate dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 370.900 / 0.98400 | Bridge orthogroup OG0001800 |
| bcdWP_457942261.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 638.000 / 0.99200 | Profile only |
| bcdWP_457945349.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 572.400 / 0.99700 | Profile only |
| etfAWP_457942257.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 443.900 / 0.98800 | Profile only |
| etfBWP_457942259.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 350.500 / 0.99600 | Profile only |
| fabGWP_457945652.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 244.800 / 0.97200 | Profile only |
| fabGWP_457943147.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 218.000 / 0.97200 | Profile only |
| fabGWP_457943059.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 217.300 / 0.98000 | Profile only |
| fabGWP_457944745.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 208.700 / 0.98000 | Profile only |
| fabGWP_457943282.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.100 / 0.98000 | Profile only |
| fabGWP_457944524.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.700 / 0.84300 | Profile only |
| fabGWP_457944231.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 130.400 / 0.76200 | Bridge orthogroup OG0000242 |
| fabHWP_457943455.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 244.100 / 0.98800 | Profile only |
| fabKWP_457943454.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 463.100 / 0.99000 | Profile only |
| fabLWP_457945652.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 219.200 / 0.96000 | Profile only |
| fabLWP_457943453.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 202.400 / 0.97200 | Profile only |
| fabLWP_457943147.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 193.200 / 0.96000 | Profile only |
| fabLWP_457943059.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.100 / 0.98000 | Profile only |
| fabLWP_457943282.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 181.600 / 0.98000 | Profile only |
| fabLWP_457944745.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.100 / 0.97200 | Profile only |
| fabLWP_457944524.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 143.900 / 0.84100 | Profile only |
| hbdWP_457942263.1 · 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 414.100 / 0.98200 | Profile only |
| ldhWP_457942742.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 425.100 / 0.98700 | Profile only |
| ldhWP_457945560.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 417.200 / 0.97800 | Profile only |
| rnfCWP_457943304.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 390.000 / 0.99500 | Profile only |
| thlWP_457942267.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 616.800 / 0.99200 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.