Assembly
ASM5435301v1
BioProject PRJNA1394478 · BioSample SAMN54322206
GENOME-RESOLVED EVIDENCE
GCA_054353015.1
Limosilactobacillus ingluviei · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 1980458 bp · GC 51.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_458618687.1 · carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 298.300 / 0.95600 | Bridge orthogroup OG0001120 |
| accBWP_458618689.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 123.300 / 0.98800 | Annotation: gene_symbol |
| accBWP_283578374.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidateverified from NCBI entries and literature | 108.500 / 0.98800 | Profile only |
| accCWP_458618688.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 632.400 / 0.99100 | Annotation: gene_symbol |
| accDWP_458619460.1 · acetyl-CoA carboxylase carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support | 327.200 / 0.94500 | Bridge orthogroup OG0000844 |
| adhEWP_056994239.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1065.600 / 0.99000 | Bridge orthogroup OG0002334 |
| fabFWP_458618690.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 507.000 / 0.98800 | Annotation: gene_symbol |
| fabGWP_019205957.1 · 3-oxoacyl-ACP reductase family protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 215.000 / 0.99600 | Bridge orthogroup OG0000008 |
| fabIWP_283573891.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 341.300 / 0.96900 | Annotation: gene_symbol |
| fabZWP_019205954.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 157.800 / 0.76000 | Bridge orthogroup OG0000074 |
| fabZWP_019205962.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 122.500 / 0.76000 | Bridge orthogroup OG0000074 |
| thlWP_458619271.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 521.800 / 0.99700 | Bridge orthogroup OG0000010 |
| accCWP_276754269.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 540.900 / 0.98900 | Profile only |
| crtWP_019206932.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.200 / 0.98500 | Profile only |
| fabGWP_019205348.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 196.900 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_458618822.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 177.100 / 0.96800 | Bridge orthogroup OG0000008 |
| fabGWP_458618815.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 166.700 / 0.96800 | Bridge orthogroup OG0000008 |
| fabGWP_056993691.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.300 / 0.88300 | Bridge orthogroup OG0000242 |
| fabHWP_458618692.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 251.000 / 0.98800 | Profile only |
| fabLWP_019205348.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.000 / 0.99200 | Profile only |
| fabLWP_458618822.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.900 / 0.98400 | Profile only |
| fabLWP_458618815.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 152.200 / 0.99200 | Profile only |
| fabLWP_019205957.1 · 3-oxoacyl-ACP reductase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 151.800 / 0.97600 | Profile only |
| fabLWP_056993691.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 140.400 / 0.88900 | Profile only |
| ldhWP_019205776.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 374.900 / 0.98100 | Profile only |
| ldhWP_019205420.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 361.200 / 0.98100 | Profile only |
| ldhWP_019205627.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 241.400 / 0.97500 | Profile only |
| ldhWP_458619139.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 225.900 / 0.96800 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.