Assembly
ASM5472917v1
BioProject PRJNA1357875 · BioSample SAMN53091637
GENOME-RESOLVED EVIDENCE
GCA_054729175.1
Limosilactobacillus reuteri subsp. reuteri · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2041522 bp · GC 39.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_003667767.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 316.400 / 0.95600 | Bridge orthogroup OG0001120 |
| accBWP_003667760.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidateverified from NCBI entries and literature | 140.800 / 0.99400 | Profile only |
| accCWP_003667763.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 649.400 / 0.99100 | Annotation: gene_symbol |
| accDWP_169471569.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 370.400 / 0.93900 | Bridge orthogroup OG0000844 |
| adhEWP_003667367.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1080.000 / 0.99300 | Bridge orthogroup OG0002334 |
| fabFWP_003667758.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 505.100 / 0.98800 | Annotation: gene_symbol |
| fabGWP_003667757.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 224.400 / 0.99200 | Bridge orthogroup OG0000008 |
| fabIWP_003667768.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 346.800 / 0.96500 | Annotation: gene_symbol |
| fabZWP_003667761.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 166.400 / 0.76000 | Bridge orthogroup OG0000074 |
| fabZWP_003667749.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 127.400 / 0.76000 | Bridge orthogroup OG0000074 |
| thlWP_003669568.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 521.400 / 0.99700 | Bridge orthogroup OG0000010 |
| crtWP_003667939.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.200 / 0.98500 | Profile only |
| fabGWP_011953536.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.800 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_003669062.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.300 / 0.99200 | Profile only |
| fabGWP_003667121.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.200 / 0.96000 | Profile only |
| fabGWP_012390529.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 166.800 / 0.87900 | Bridge orthogroup OG0000242 |
| fabHWP_003667751.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 285.500 / 0.98800 | Profile only |
| fabLWP_011953536.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.200 / 0.99200 | Profile only |
| fabLWP_003667757.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.400 / 0.97600 | Profile only |
| fabLWP_003669062.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.700 / 0.99200 | Profile only |
| fabLWP_003667121.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 149.300 / 0.96800 | Profile only |
| fabLWP_012390529.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 138.300 / 0.88900 | Profile only |
| ldhWP_003665815.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 391.100 / 0.98700 | Profile only |
| ldhWP_003667903.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 373.200 / 0.97500 | Profile only |
| ldhWP_003668523.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 331.600 / 0.98100 | Profile only |
| ldhWP_011953379.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 257.200 / 0.96800 | Profile only |
| ldhWP_003669420.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 224.300 / 0.97500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.