Assembly
ASM5508099v1
BioProject PRJNA1348486 · BioSample SAMN52901278
GENOME-RESOLVED EVIDENCE
GCA_055080995.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3886012 bp · GC 31.500%
Completeness 97.200% · contamination 1.240%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACWJJ7_12285 | MHE2231254.1 | OG0000061 | CM143646.1:2589580–2590923 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. CM042] |
| ldhACWJJ7_05650 | MHE2230027.1 | OG0000131 | CM143646.1:1208782–1209729 + | L-lactate dehydrogenase [Clostridium sp. CM042] |
| accBACWJJ7_02425 | MHE2229405.1 | OG0000212 | CM143646.1:472042–472536 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM042] |
| accBACWJJ7_12275 | MHE2231252.1 | OG0000212 | CM143646.1:2588520–2589014 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM042] |
| hbdACWJJ7_09790 | MHE2230833.1 | OG0000229 | CM143646.1:2077594–2078442 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. CM042] |
| thlACWJJ7_09280 | MHE2230733.1 | OG0000234 | CM143646.1:1970901–1972079 - | acetyl-CoA C-acetyltransferase [Clostridium sp. CM042] |
| fabZACWJJ7_12280 | MHE2231253.1 | OG0000785 | CM143646.1:2589082–2589528 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. CM042] |
| lctPACWJJ7_07520 | MHE2230382.1 | OG0001228 | CM143646.1:1596828–1598351 - | L-lactate permease [Clostridium sp. CM042] |
| crtACWJJ7_09810 | MHE2230837.1 | OG0001394 | CM143646.1:2081608–2082387 - | short-chain-enoyl-CoA hydratase [Clostridium sp. CM042] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.