Assembly
ASM5508103v1
BioProject PRJNA1348486 · BioSample SAMN52901277
GENOME-RESOLVED EVIDENCE
GCA_055081035.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3633489 bp · GC 31.500%
Completeness 98.450% · contamination 1.240%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACWJJT_11580 | MHE2237763.1 | OG0000061 | CM143648.1:2477075–2478418 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. CM041] |
| accBACWJJT_11570 | MHE2237761.1 | OG0000212 | CM143648.1:2475990–2476508 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM041] |
| hbdACWJJT_09215 | MHE2237363.1 | OG0000229 | CM143648.1:1972188–1973036 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. CM041] |
| thlACWJJT_08720 | MHE2237267.1 | OG0000234 | CM143648.1:1861573–1862751 - | acetyl-CoA C-acetyltransferase [Clostridium sp. CM041] |
| fabZACWJJT_11575 | MHE2237762.1 | OG0000785 | CM143648.1:2476578–2477024 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. CM041] |
| lctPACWJJT_07110 | MHE2236949.1 | OG0001228 | CM143648.1:1520087–1521610 - | L-lactate permease [Clostridium sp. CM041] |
| crtACWJJT_09235 | MHE2237367.1 | OG0001394 | CM143648.1:1976202–1976981 - | short-chain-enoyl-CoA hydratase [Clostridium sp. CM041] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.